RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
O. U. Nalbantoglu, S. F. Way, S. H. Hinrichs, and K. Sayood
BMC Bioinformatics 2011, 12:41
Small Molecule Inhibitors of Staphylococcus aureus RnpA Alter Cellular mRNA Turnover, Exhibit Antimicrobial Activity, and Attenuate Pathogenesis
P. D. Olson, L. J. Kuechenmeister, K. L. Anderson, S. Daily, K. E. Beenken, K. Sayood, et al.
PLoS Pathog 7(2): e1001287


A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
D. J. Russell, S. F. Way, A. K. Benson, and K. Sayood
BMC Bioinformatics 2010, 11:601
Inactivation of Phospholipase D Diminishes Acinetobacter baumannii Pathogenesis
A. C. Jacobs, I. Hood, K. Boyd, P. D. Olson, J. M. Morrison, S. Carson, K. Sayood, et al.
Infection and Immunity 2010, 78:1952-1962


Grammar-based distance in progressive multiple sequence alignment
D. J. Russell, H. H. Otu, and K. Sayood
BMC Bioinformatics 2008, 9:306
The Average Mutual Information Profile as a Genomic Signature
M. Bauer, S. M. Schuster, and K. Sayood
BMC Bioinformatics 2008, 9:48


A new sequence distance measure for phylogenetic tree construction
H. H. Otu and K. Sayood
Bioinformatics 2003, 19 (16):2122-2130